Torchwood and Jack stories

[donutsweeper]

Torchwood stories (labeled so because least someone from the team other than Jack appears)

listed in order written, the first several are very *very* bad

Begrudging Acceptance- Jack accepts things as they are now, to an extent, rated G, 100 words
The Missing Person's Report- The team considers filling out a report, rated G, 64 words
Jack's Secret Fear- Would they welcome him back? rated G, 164 words
Bleak Prospects- Ianto tries to find out what's been bothering Jack, rated G, 752 words
Painful Lessons- The team debated what to do about an injured Jack, rated PG, 1700 words
Triskaidekaphobia - Owen hates Friday the 13th, rated G, 92 words
Lessons Learned (sequel to Painful Lessons) The team avoids Jack as he recovers from an injury, rated G, 1345 words
Heritage- Jack is jealous of Tosh, rated G, 100 words
Three Minutes 47 Seconds- Owen is tormented while waiting for rescue, rated R, 1318 words
Jack's Hero- A little soliloquy, rated G, 265 words
Tonight's Entree: Purple, Jack makes Ianto dinner, rated G, 257 words
Seeing Behind the Mask- Ianto's thoughts on Jack, rated PG, 507 words
Facing the Future- Jack ponders his future, rated G, 170 words
Sharing Nightmares_ Jack explains to Tosh about his secret fear, rated G, 658 words
The Psychic Paper Message- What Owen says when he can't communicate, rated G, 100 words
The Conference Call- Ianto notices Jack's unconscious tells, rated G, 100 words
Invisible Scars- Ianto confronts Jack over what happened while he was away from Torchwood, rated PG, 1283 words
Poison and Painful History- Jack is poisoned and Torchwood can't help him, but maybe the Doctor can, rated PG, 2266 words (sequel follows)
Painful History and Past Mistakes- the Doctor's perspective, rated PG, 1176 words
The Tea Party- Jack holds an impromptu tea party to help a little girl, rated G, 211 words
The Case of the Chocoholic Squirrel- Owen and Jack are on a stakeout of a chocoholic squirrel, rated G, 626 words
Unexpected Tourists- An old friend of Jack's visits, bringing the Torchwood team evidence that aliens have landed in Wales, rated G, 7032 words
Caring for the Captain- After completing a treaty Jack needs Ianto to take care of him, rated R, 1271 words
The Picnic- Jack can't quite enjoy a picnic with the team, rated G, 100 words
Hair of the Dog- A night of drinking leaves Ianto a bit cranky, rated G, 162 words
The Siamese Sea- Armed only with vacuum cleaners Owen and Ianto have to fight off horde of felimorphs to save Jack , rated G, 409 words
Boys and Their Toys-  Ooops, rated G, 100 words
Jack's Unusual Outfit-  Jack's dressed a bit differently, Owen and Ianto want to know why, rated G, 100 words
Jack's Treasures- Trinkets or treasures, they are what Jack holds dear, rated G, 100 words
What Are You Wearing?- Sometimes, it's better not to ask, rated G, 100 words
Uh-Oh-  There's something neither Owen nor Ianto want to tell Jack, rated G, 100 words
Passing Notes in Class- A boring lecture might turn out interesting for Jack and Ianto after all, rated G, 100 words
I Must Be Strong, and Carry On- Jack/Jack- Two kindred spirits find each other, just for one night (vidfic) rated G, 411 words
T-Shirt Memories- (prequel to Jack's Unusual Outfit) Jack picks his costume for Halloween, rated G, 100 words
The Case of the Pine Cone Liberation Organization- Murray the Squirrel is back, rated G, 777 words
The Baby Shower- Even a pterodactyl deserves one, rated G, 100 words
Oops (prequel to Uh-Oh)- Owen does something stupid, rated G, 100 words
The Powdered Sugar Tornado (1st in the series) Donuts come through the rift, rated PG, 100 words
Powdered Sugar Reprise- (2nd in series), rated G, 100 words
Powdered Sugar Regrets- (3rd in series), rated G, 100 words
Powdered Sugar Research- (4th in series), rated G, 100 words
Caffeine Fumes- Jack and his affinity for coffee, rated G, 100 words
Powdered Sugar Results- (5th in series), rated G, 100 words
Powdered Sugar Requiem- (6th in series), rated G, 100 words
A Pair of Jacks- Owen screws up, Jack1 and Jack2 have some fun, rated PG, 100 words
Glory Days- Jack reminisces, rated G, 100 words
Jack's Special Thanksgiving Plans- (7th in Powdered Sugar series), rated G, 100 words
Owen's Thanksgiving Musings- (8th in Powdered Sugar series), rated G, 100 words
Donuts and Paperwork- (9th in Powdered Sugar series), rated G, 100 words
Donuts and Dusting- (10th in Powdered Sugar series), rated G, 100 words
The Anniversary- Gwen helps Jack embrace his special day, rated G, 257 words
The Hunter- Jack is on a hunt, rated G, 255 words
Caffeine Cleansing- Sometimes Ianto can be a little too studious with his cleaning, rated G, 100 words
The Mark He Bears- Scars can tell a lot about a person, rated G, 100 words
The Most (un)Wonderful Time of the Year- Jack envies the team, rated G, 100 words
Oh Captain, My Captain- The Doctor ponders Jack, rated G, 100 words
Jack's Law- Jack explins his law to Owen, rated G, 100 words
Schrödinger's Coffee- Jack and Tosh discuss coffee, rated G, 100 words
Monitoring the Donuts- (11th in Powdered Sugar series), rated G, 100 words
Bad Choices- Owen and Ianto help Jack, rated G, 100 words
Dying To Be A Hero- Owen and Ianto debate over Jack's dead body, rated G, 255 words
Quantum Coffee- Jack and Tosh discuss the act of making coffee, rated G, 100 words
Welcome Home, Jack is not welcomed home in the way he had expected, rated G, 243 words
Nocturnal Musings- Someone watches Jack sleep, rated PG-13, 345 words
Love Nest- (12th in Powdered Sugar series), rated G, 100 words
Duty- There are many ways to fulfill one's duty, rated PG, 377 words
Out of Time No More- Jack mourns, rated G, 200 words
The Bride Wore Black- Jack learns hypervodkas and diplomatic missions don't mix, rated G, 274 words
The Stray- Tosh wants the team to adopt a kitten, rated G, 100 words
Jack and the Ultimate No Good Cracktastically Clichéd Very Bad Day- 18 fanfic clichés, rated PG, 610 words
Unwelcome Answers, Owen and Gwen interrogate Jack, rated PG, 1529 words
A Stolen Moment- Two Torchwood teammates steal a moment together, rated NC-17,100 words
The Windsor, (1st in The Clothing Series), rated PG, 100 words
The Shirt- (2nd in The Clothing Series), rated PG, 100 words
The Belt- (3rd in The Clothing Series), rated PG-13, 100 words
The Trousers- (4th in The Clothing Series), rated PG-13, 100 words
The Trousers, Take Two- (5th in The Clothing Series), rated PG-13, 100 words
Ménage à Trois, Rhys/Owen/Jack, rated R, 100 words
Ménage à Trois Part Deux, Rhys/Owen/Jack sequel, rated NC-17, 100 words
The Pants- (6th in The Clothing Series), rated PG-13, 100 words
Alphabet Soup- The team has a certain pastime when it comes to tracking Jack's deaths, rated G, 640 words
Legends and Legacies- And old friend needs Jack’s help, rated G, 21907 words
The Electric Lime Invitation- Jack gets an invitation he can't refuse, rated G, 497 words
It's Tradition- Gwen learns about the things we do in the name of tradition, rated G, 100 words
Whistle While You Work- Ianto's life after quitting Torchwood, rated R, 100 words
Learning to Whistle- prequel-  How Ianto got his chains, rated R, 437 words
The Clothing Series Finale- (7th in The Clothing Series), rated PG-13, 100 words
A Lesson in Whistling- (3rd in series), Ianto's future when he quit Torchwood, rated R, 559 words
Ways to Win an Argument- -Jack's technique for winning, rated R, 100 words
Ianto's Secret- Owen leans a secret Ianto had been trying to keep hidden, rated G, 258 words
Quarantine- When the team is confined to the Hub, Jack knows how to spend the time, rated G, 373 words
Restitution, The Clothing Series Postscript- (8th in The Clothing Series), rated NC-17, 100 words
Barrel of What?- Andy getting into a spot of trouble and calls Gwen for help., rated G 100 words (also here)
Rhythm and Blues- Owen, Tosh and Gwen in rhyme, rated G, 158
Owen, the Mighty Hunter- It was a tale of tale of derring-do that Owen was proud to tell, rated G, 795 words
Of Blocks and Horses- Rhys has learned how to interpret the word "no," rated G, 187 words (also here)
Owen's Powdered Sugar Plans- 13th powdered sugar crack!fic, rated G, 100 words
Torchwood Bulletin Board- an art collaboration with _medley_ 
A Ticket on the Crazy Train- Sometimes Jack wondered if the inmates were running the asylum, rated G, 100 words
WHEE!!!- Jack's in a bit of a bind when a circus ship arrives for an engagement a century early, rated G, 100 words
Perpetuity- Vague Jack/Ianto, dark themes and bleak/depressing fic warning, An AU retelling of the last few minutes "End of Days" with a very different, and much sadder, ending for Jack, rated PG, 994 words 
Promises Fulfilled- (9th in The Clothing Series), Jack/Ianto, rated NC-17, 100 word
States of Being- Jack/Owen, Owen has a certain way of dealing with Jack, NC-17, 100 words
Horrors Most Profound- Owen made the coffee, rated G, 300 words
Reacquainting Oneself-Jack makes a decision regarding Owen, rated G, 220 words
Powdered Sugar Problems- 14th powdered sugar crack!fic, rated G, 100 words
The Case of the Plotting Squirrel- Murray will have his revenge, rated G, 200 words
Games of Days Gone By- In the future, a piece of Torchwood Three is rediscovered (with accompanying art), rated G, 459 words
Reaching Out- Either Owen or Jack was going to have to reach out if they didn't want to remain alone, rated PG, 243 words
The Menagerie-Things go a bit awry for Jack, Tosh, Owen and Gwen after a piece of alien technology is activated, rated G, 439 words (with art, made by rustydog)
Great Fun To Be Had- Jack/Ianto, It was great fun, but it was just one of those things, PG-13, 300 words
Leaving a Mark- Jack/Owen, Owen's learned some things in life, PG, 100 words
Longing Looks- Jack/Ianto (with squick warning), Ianto ages, Jack doesn't, PG, 477 words
Marks of a Hero- None of Jack's injuries ever leave a scar, PG, 509 words 
Laying Claim- Jack/Owen dynamic, Jack teaches Owen a thing or two, PG-13, 136 words
The Ache- Jack was Torchwood now, and tired of it, G, 100 words
The Goodbye- Goodbyes can be painful, PG, 100 words


Jack Stories (not with the team or the Doctor)

noncrossovers

The Incident at Ellis Island- based on the quote of "Utopia," rated PG, 1377 words
Walking the Low Road to Nowhere- Stuck in the 1870's Jack drinks and plans, rated G, 662 words
The Laugh of a Dead Man- What would you do if you saw a man you knew was dead? rated G, 473 words
How Death Comes- Death comes for everyone (vidfic), rated G, 100 words
Superman, Clark Kent and Me- Jack ponders about saving the world (vidfic), rated G, 100 words
Lifetime Guarantee- Jack gets a new wrist computer, rated G, 100 words
The Birthday Memory- Someone special in Jack's life is having a birthday, rated G, 100 words
The Bedtime Ritual (sequel to Birthday Memory)- Jack makes a promise, rated G, 100 words
Dreams That Shatter- Jack seeks justice for a crime, rated PG-13, 100 words
Whisky And Rain- A mourning Jack isn't sure what to feel, rated G, 819 words
To Listen- Jack makes a resolution, rated G, 100 words
Stagnation- Jack can't see his scars, rated G, 100 words
Pleasure and Pride- Jack takes pride in providing pleasure, rated R, 100 words
So Then What Happened?-  A Miss Maggie fic, The story of "The Empty Child" as told to a 5 year old by Jack, eventually, if she ever lets him finish, rated G, 925 words

crossovers (a listing in order by fandom can be found here)

A Mountie, a Wolf, and a Dead Man- (Due South Crossover) Diefenbaker and Fraser wait for Jack to wake up- rated G, 100 words
The Captain and the Constable- (Due South Crossover) Two men walk into a bar, rated G, 803 words
Charming the Pants off the Pashahads (Stargate Atlantis Crossover) Jack tries to get Sheppard's team out of hot water, part one, part two, rated PG, 11878
The Furry Doorstop- (Due South Crossover) Ray meets Jack, rated G, 100 words
The Weapons Test- (Stargate Atlantis Crossover) Jack surprises Elizabeth, rated G, 100 words
The Wolf at the Door- (Due South Crossover) Jack and Dief have a heart-to-heart, rated G, 100 words
Alien Donuts- (SGA Crossover, 1st in drabble series) The donuts come to the Pegasus Galaxy, rated G
 Alien Donut Aftermath, (SGA Crossover, 2nd in drabble series) rated G
Alien Donut Discussions, (SGA Crossover, 3th in drabble series) rated PG
Alien Donut Discoveries, (SGA Crossover, 4th in drabble series) rated G
Alien Donut Denial, (SGA Crossover, 5th in drabble series) rated G
Alien Donut Discretion, (SGA Crossover, 6th in drabble series) rated G
Alien Donut Dismissals, (SGA Crossover, 7th in drabble series) rated PG
Alien Donut Disquiet, (SGA Crossover, 8th in drabble series) rated PG
Alien Donut Détente, (SGA Crossover, 19th in drabble series) rated G
Alien Donut Doings, (SGA Crossover, 10th in drabble series) rated PG
Alien Donut Delight, (SGA Crossover, 11thin drabble series) rated PG-13
Alien Donut Deliveries, (SGA Crossover, 12th in drabble series) rated G
Conversations with the Dead- (Due South Crossover) Jack and Bob Fraser talk, rated G, 416 words
Scents and Sensibilities (Due South Crossover), Jack, Dief and Ben meet up, rated G, 1000 words
The Stick Dance- (SGA Crossover) Sometimes a good leader needs to let his team fix things for themselves, 1154 words
Electrocution Isn’t As Fun As You’d Think... (SGA Crossover), Jack isn't sure he should trust Rodney, rated G, 100 words
Revenge Can Be Sweet- (SGA Crossover) Radek and Jack bond over their annoyance of McKay, rated G, 100 words
Trust's Fine Line- (SGA Crossover) Jack and Carson discuss trust, rated G, 100 words
The Snapshot- (Due South Crossover), Jack enjoys a moment with Ben, rated PG, 123 words
The Bar Fight- (Discworld Crossover) Jack makes a new friend, rated G, 100 words
Physician, Heal Thyself- (SGA Crossover), Jack tries to help Carson, rated G, 439 words
The Wizard and the Alien Hunter- (Dresden Files Crossover), Harry Dresden has a mysterious client, rated G, 1209 words
The Waiting Game- (Discworld Crossover), How Jack passes the time while dead, rated G, 167 words
Here Be Dragons- (Discworld crossover), Jack knows a few things about dragons, rated G 274 words
The Autopsy Table- (NCIS Crossover) There are many uses for an autopsy table, rated G, 172 words
Loving Reminders- (Dark Angel Crossover), physical changes can be overcome, rated PG-13, 781 words 
An Atypical Investigation, (NCIS Crossover), A dead man at a crime scene doesn't stay dead, rated G, 1831 words. Ianto also appears
The Wizard, the Ghost, and the Alien Hunter, (Dresden Files Crossover) sequel, rated G, 283 words
The Impartial Parrot- (Crossover of Doom), There is a pub that spies gravitate to, rated PG, 1293 words
Sacrifices- (SGA Crossover), the team is captured off-world, rated PG, 1446 words
Old Friends and Unfamiliar Faces- (Due South Crossover), Jack meets up with Ben again.  Dief is happy to see him, but Ray's a little nervous, rated G, 1158 words
Playing Around- (X-Files Crossover), Jack has some fun with a certain FBI agent, rated G, 100 words
The Big Event- (NCIS, Doctor Who, Due South, Stargate Atlantis, Discworld Crossover) The Torchwood team plans an important celebration, rated G, 3001 words.  Entire TW team appears
The Four Times Dean Was In Over His Head- (Supernatural Crossover) Jack helps out Dean, rated G, 2364 words
When It All Went Out- (Discworld Crossover) The universe ends and Jack's not sure what to do next, rated G, 273 words
Flying The Friendly Skies- (SGA crossover) Jack, John and a shared passion, rated G, 300 words
A Helping Hand- (Supernatural Crossover) When faced with massive, bizarre spiderwebs Dean calls an expert for help, rated G, 869 words
Charlie on the Shoulder- (Discworld Crossover) Owen's a little disconcerted at the favor Tosh does for Lady Sybil., G, 295 words
Is As It Was- (NCIS Crossover) Ducky tells Tony a story of days gone by and how he started working for a secret governmental agency... rated G, 2113 words (also here)
Rift Trips For Nothing And The Chicks For Free- (Loony Toons, Sesame Street, children's fables, and Torchwood) The plass is inundated by poultry, rated G, 100 words
Ships That Pass- Babylon 5, A brief conversation between Jack and G'Kar, G, 514 words
A Night At The Morgue Opera- due South crossover, Ben gets a call from the morgue, G, 353 words
An Atypical Rendezvous - NCIS crossover, Gibbs meets up with Jack Harkness again, G, 300 words
Happydale Horrors - SPN crossover (sort of), The ‘Happydale Home for Seniors’ was living up to its name, unfortunately for Sam and Dean, PG, 644 words

See here for Jack in current Who stories and here for ones with previous Doctors or companions